T. Fukuda, K. Muroda, H. Kandori*
"Detection of a protein-bound water vibration of halorhodopsin in aqueous solution"
BIOPHYSICS, 9, 167-172 (2013)
A. Cheminal, J. Leonard, S. Y. Kim, K.-H. Jung, H. Kandori, S. Haacke*
"Steady state emission of the fluorescent intermediate of Anabaena Sensory Rhodopsin as a function of light adaptation conditions"
Chem. Phys. Lett. 587, 75-80 (2013)
S. Doki, H. E. Kato, N. Solcan, M. Iwaki, M. Koyama, M. Hattori, N. Iwase, T. Tsukazaki, Y. Sugita, H. Kandori, S. Newstead*, R. Ishitani*, O. Nureki*
"Structural basis for dynamic mechanism of proton-coupled symport by the peptide transporter POT"
Proc. Natl. Acad. Sci. U S A. 110, 11343-11348 (2013)
T. Tsukamoto, K. Inoue, H. Kandori, Y. Sudo*
"Thermal and spectroscopic characterization of a proton pumping rhodopsin from an extreme thermophile"
J. Biol. Chem. 288, 21581-21592 (2013)
Y. Sudo*, A. Okazaki, H. Ono, J. Yagasaki, S. Sugo, M. Kamiya, L. Reissig, K. Inoue, K. Ihara, H. Kandori, S. Takagi, S. Hayashi
"A Blue-shifted Light-driven Proton Pump for Neural Silencing"
J. Biol. Chem. 288, 20624-20632 (2013)
K. Inoue, H. Ono, R. Abe-Yoshizumi, S. Yoshizawa, H. Ito, K. Kogure, H. Kandori*
"A light-driven sodium ion pump in marine bacteria"
Nature Commun. 4, 1678 (2013)
H. Yamashita, K. Inoue, M. Shibata, T. Uchihashi, J. Sasaki, H. Kandori, T. Ando*
"Role of trimer-trimer interaction of bacteriorhodopsin studied by optical spectroscopy and high-speed atomic force microscopy"
J. Struct. Biol. 184, 2-11 (2013)
S. Tahara, Y. Kato, H. Kandori and H. Ohtani*
"pH-dependent photoreaction pathway of the all-trans form of Anabaena sensory rhodopsin"
J. Phys. Chem. B 117, 2053-2060 (2013)
S. Inada, M. Mizuno, Y. Kato, A. Kawanabe, H. Kandori, Z. Wei, S. Takeuchi, T. Tahara and Y. Mizutani*
"Primary structural response in tryptophan residues of Anabaena sensory rhodopsin to photochromic reactions of the retinal chromophore"
Chem. Phys. 419, 65-73 (2013)
I M. M. Wijaya, Y. Zhang, T. Iwata, J. Yamamoto, K. Hitomi, S. Iwai, E. D. Getzoff and H. Kandori*
"Detection of distinct α-helical rearrangements of CPD photolyase upon substrate binding by FTIR spectroscopy"
Biochemistry 52, 1019-1027 (2013)
D. Yamada and H. Kandori*
"FTIR spectroscopy of flavin-binding photoreceptors"
Methods in Molecular Biology, in press (2013)
L. Reissig, T.
Iwata, T. Kikukawa, M. Demura, N. Kamo, H. Kandori and Y. Sudo*
"The influence of halide binding on the hydrogen bonding network in the
active site of Salinibacter sensory rhodopsin I"
Biochemistry 51, 8802-8813 (2012).
Y. Furutani, H. Shimizu, Y. Asai, T. Fukuda, S. Oiki, and H. Kandori*
"ATR-FTIR Spectroscopy Revealing the Different Vibrational Modes of the Selectivity Filter Interacting with K+ and Na+ in the Open and Collapsed Conformations of the KcsA Potassium Channel"
J. Phys. Chem. Lett. 3, 3806-3810(2012).
Y. Furutani*, K.
Fujiwara, T. Kimura, T. Kikukawa, M. Demura and H. Kandori
"Dynamics of dangking bonds of water molecules in pharaonis halorhodopsin
during chloride ion transportation"
J. Phys. Chem. Lett. 3, 2964-2969
(2012).
H. Ito, M. Sumii, A. Kawanabe, Y. Fan, Y.
Furutani, L. S. Brown and H. Kandori*
"Comparative FTIR study of a new fungal rhodopsin"
J. Phys. Chem. B 116, 11881-11889
(2012).
K. Saito, H.
Kandori and H. Ishikita*
"Factors that differentiate the H-bond strengths of water near the Schiff
base in bacteriorhodopsin and Anabaena sensory rhodopsin"
J. Biol. Chem. 287, 34009-34018
(2012).
D. Yamada, Y. Zhang, T. Iwata, K.
Hitomi, E. D. Getzoff and H. Kandori*
"FTIR study of the photoactivation process of Xenopus (6-4)
photolyase"
Biochemistry 51, 5774-5783
(2012).
S. Sekharan*, K.
Katayama, H. Kandori and K. Morokuma*
"Color vision: "OH-site" rule for seeing red and green"
J. Am. Chem. Soc. 134,
10706-10712 (2012).
K. Muroda, K. Nakashima, M. Shibata M. Demura and H.
Kandori*
"Protein-bound water as the determinant of asymmetric functional
conversion between light-driven proton and chloride pumps"
Biochemistry 51, 4677-4684 (2012)
K. Inoue, L. Reissig, M. Sakai, S. Kobayashi, M. Homma, M. Fujii, H.
Kandori, and Y. Sudo*
"Absorption spectra and photochemical reactions in a unique photoactive
protein, middle rhodopsin MR"
J. Phys. Chem. B 116, 5888-5899
(2012)
T. Kanti Maiti, K. Yamada, K. Inoue and H. Kandori*
"L105K mutant of proteorhodopsin"
Biochemistry 51, 3198-3204 (2012)
K. Yamada, A. Kawanabe, S. Yoshizawa, K. Inoue, K. Kogure and H.
Kandori*
"Anomalous pH effect of blue proteorhodopsin"
J. Phys. Chem. Lett. 3, 800-804
(2012)
K. Katayama, Y. Furutani, H. Imai and H.
Kandori*
“Protein-bound water molecules in primate red- and green-sensitive visual
pigments”
Biochemistry 51, 1126-1133 (2012).
S. Yoshizawa*, A. Kawanabe, H. Ito, H. Kandori and K.
Kogure*
"Diversity and functional analysis of proteorhodopsin in marine Flavobacteria"
Environ. Microbiol. 14, 1240-1248 (2012).
T. Iwata, S. Tokutomi, and H. Kandori*
“Light-induced structural changes of the LOV2 domains in various phototropins
revealed by FTIR spectroscopy”
BIOPHYSYCS 7, 89-98 (2012)
Y. Zhang, J. Yamamoto, D. Yamada, T. Iwata, K. Hitomi, T.
Todo, E. D. Getzoff, S. Iwai and H. Kandori*
"Substrate Assignment of the (6-4) Photolyase Reaction by FTIR
Spectroscopy"
J. Phys. Chem. Lett. 183,
2774-2777 (2011)
G. Dai, Y. Zhang, J. Tamogami, M. Demura, N. Kamo, H. Kandori and
T. Iwasa*
"An Amino Acid Residue (S201) in the Retinal Binding Pocket Regulates the
Photoreaction Pathway of Phoborhodopsin"
Biochemistry 50. 7177-7183 (2011)
V. A. Lorenz-Fonfria*, H. Kandori and E. Padros
"Probing specific molecular processes and intermediates by time-resolved
Fourier-transform
infrared spectroscopy: Application to the bacteriorhodopsin photocycle"
J. Phys. Chem. B 115, 7972-7983
(2011).
H. Irieda, L. Reissig, A. Kawanabe, M. Homma, H. Kandori and Y.
Sudo*
"Structural characteristics around β-ionone ring of the retinal
chromophore in Salinibacter
sensory rhodopsin I"
Biochemistry 50, 4912-4922
(2011).
T. Iwata, A. Watanabe, M. Iseki, M. Watanabe and H. Kandori*
"Strong donation of the hydrogen bond of tyrosine during photoactivation
of the BLUF domain"
J. Phys. Chem. Lett. 2, 1015-1019 (2011).
Y. Zhang, T. Iwata, J. Yamamoto, K. Hitomi, S. Iwai, T. Todo, E.
D. Getzoff and H. Kandori*
"FTIR study of light-dependent activation and DNA repair processes of
(6-4) photolyase"
Biochemistry 50, 3591-3598
(2011).
J. Sasaki, H. Takahashi, Y. Furutani, H. Kandori and J. L.
Spudich*
"Sensory rhodopsin-I as a flip-flop: Opposite conformational changes from
the same photoisomerization"
Biophys. J. 100, 2178-2183
(2011).
K. Inoue*, Y. Sudo, M. Homma and H. Kandori
"Spectrally silent intermediates during the photochemical reactions of Salinibacter sensory rhodopsin I"
J. Phys. Chem. B 115, 4500-4508
(2011).
M. Shibata, T. Uchihashi, H. Yamashita, H. Kandori and T. Ando*
"Structural changes in bacteriorhodopsin in response to alternate
illumination
observed by high-speed atomic force microscopy"
Angew. Chem. Int. Ed. 50,
4410-4413 (2011).
A. Nakatsuma, T. Yamashita, K. Sasaki, A. Kawanabe, K.
Inoue, Y. Furutani, Y. Shichida and H. Kandori*
"Chimeric microbial rhodopsins containing the thrid cytoplasmic loop of
bovine rhodopsin"
Biophys. J. 100, 1874-1882
(2011).
Y. Furutani, T. Murata and H. Kandori*
"Sodium or lithium ion-binding-induced structural changes in the K-ring of
V-ATPase
from Enterococcus hirae revealed by ATR-FTIR spectroscopy"
J. Am. Chem. Soc. 133, 2860-2863
(2011).
Y. Sudo*, K. Ihara, S. Kobayashi, D. Suzuki, H. Irieda, T. Kikukawa, H.
Kandori and M. Homma
"A microbial rhodopsin with a unique retinal composition shows both
sensory rhodopsin II
and bacteriorhodopsin-like properties"
J. Biol. Chem. 286, 5967-5976
(2011).
A. Kawanabe, Y. Furutani, K.-H. Jung and H. Kandori*
"An inward proton transport using Anabaena
sensory rhodopsin"
J. Microbiol. 49, 1-6 (2011).
H. Kandori
“Protein-Controlled Ultrafast Photoisomerization in Rhodopsin and
Bacteriorhodopsin”
in "Supramolecular Effects on Photochemical and Photophysical
Processes", V.
Ramamurthy, Y. Inoue, eds., John Wiley & Sons, Inc. Hoboken, pp. 571-595
(2011).
R. S. H. Liu, L.-Y. Yang, Y.-P. Zhao, A. Kawanabe and H. Kandori
“Supramolecular Effects on Mechanisms of Photoisomerization: Hula-Twist,
Bicycle-Pedal and One-Bond-Flip”
in "Supramolecular Effects on Photochemical and Photophysical
Processes", V.
Ramamurthy, Y. Inoue, eds., John Wiley & Sons, Inc. Hoboken, pp. 547-570
(2011).
T. Iwata, Y. Zhang, K. Hitomi, E. D. Getzoff and H.
Kandori*
"Key dynamics of conserved asparagine in a cryptochrome/photolyase family
protein by Fourier transform infrared spectroscopy"
Biochemistry 49, 8882-8891
(2010).
S. Kawaguchi, O. Kambara, M. Shibata, H. Kandori and K. Tominaga*
"Low-frequency dynamics of bacteriorhodopsin studied by terahertz
time-domain spectroscopy"
Phys Chem Chem Phys. 12,10255-10262
(2010).
K. Katayama, Y. Furutani and H. Kandori*
"FTIR study of the photoreaction of bovine rhodopsin in the presence of
hydroxylamine"
J Phys Chem B. 114, 9039-9046
(2010).
S. Neya*, M.
Suzuki, T. Hoshino, H. Ode, K. Imai, T., Komatsu, A. Ikezaki, M. Nakamura, Y.
Furutani
and H. Kandori
"Molecular insight into intrinsic heme distortion in ligand binding in
hemoprotein"
Biochemistry 49, 5642-5650
(2010).
V. A. Lorenz-Fonfria, Y. Furutani. T. Ota, K.
Ido and H. Kandori*
"Protein fluctuations as the possible origin of the thermal activation of
rod photoreceptors in the dark"
J. Am. Chem. Soc. 132, 5693-5703 (2010).
K. Hashimoto, A. R. Choi, Y. Furutani, K.-H. Jung and H.
Kandori*
"Low-temperature FTIR study of Gloeobacter rhodopsin: Presence of strongly
hydrogen-bonded water and
long-range structural protein perturbation upon retinal
photoisomerization"
Biochemistry 49, 3343-3350 (2010).
K. Yamada, A. Kawanabe and H. Kandori*
"Importance of alanine at position 178 in proteorhodopsin for absorption
of prevalent ambient light in the marine environment"
Biochemistry 49, 2416-2423
(2010).
M. Shibata, H. Yamashita, T. Uchihashi, H. Kandori and T. Ando*
"High-speed atomic force microscopy shows dynamic molecular processes in
photoactivated bacteriorhodopsin"
Nature Nanotechnol. 5, 208-212
(2010).
J. Yagasaki, D. Suzuki, K. Ihara, K. Inoue, T. Kikukawa, M. Sakai, M.
Fujii, M. Homma, H. Kandori* and Y. Sudo*
"Spectroscopic studies of a sensory rhodopsin I homologue from the
archaeon Haloarcula vallismortis"
Biochemistry 49, 1183-1190
(2010).
K. Katayama, Y. Furutani, H. Imai* and H. Kandori*
"An FTIR study of monkey green- and red-sensitive visual pigments"
Angew. Chem. Int. Ed. 49, 891-894
(2010).
H. Kandori
"Hydrogen Bonds of Protein-Bound Water Molecules in Rhodopsins" in
"Hydrogen Bonding and Transfer in the Excited State",
K.-L. Han, G.-J. Zhao, eds., pp. 377-391, John Wiley & Sons Ltd, West
Sussex (2010).
H. Kandori, Y. Sudo and Y. Furutani
"Protein-Protein Interaction Changes in an Archaeal Light-Signal
Transduction"
J. Biomed. Biotech. in press
(2010).
Y. Sudo, Y.
Kitade, Y. Furutani, M. Kojima, S. Kojima, M. Homma* and H.
Kandori*
"Interaction between Na+ Ion and Carboxylates of the PomA-PomB Stator Unit
Studied by ATR-FTIR Spectroscopy"
Biochemistry 48, 11699-11705
(2009).
Y. Sudo*, A. Okada, D. Suzuki, K. Inoue, H. Irieda, M. Sakai, M. Fujii, Y.
Furutani, H. Kandori and M. Homma
"Characterization of a Signaling Complex Composed of Sensory Rhodopsin I
and Its Cognate Transducer Protein from the Eubacterium Salinibacter
ruber"
Biochemistry 48, 10136-10145
(2009).
A. Kawanabe, Y. Furutani, K.-H. Jung and H. Kandori*
"Engineering an inward proton transport from a bacterial sensor
rhodopsin"
J. Am. Chem. Soc. 131,
16439-16444 (2009).
M. Mizuno, M. Shibata, J. Yamada, H. Kandori and Y. Mizutani*
"Picosecond time-resolved ultrafast resonance Raman spectroscopy of
bacteriorhodopsin: Primary protein response to the photoisomerization of
retinal"
J. Phys. Chem. B 113, 12121-12128
(2009).
T. Koyama, T. Iwata, A. Yamamoto, Y. Sato, D.
Matsuoka, S. Tokutomi and H. Kandori*
"Different Role of the Jα Helix in the Light-Induced Activation of the
LOV2 Domains in Various Phototropins"
Biochemistry 48, 7621-7628
(2009).
D. Suzuki, Y. Furutani, K. Inoue, T. Kikukawa, M. Sakai, M. Fujii, H.
Kandori, M. Homma and Y. Sudo*
"Effect of Chloride Ion Binding on the Photochemical Properties of
Salinibacter Sensory Rhodopsin I"
J. Mol. Biol. 392, 48-62 (2009).
T. Mizuno*, K. Suzuki, T. Imai, Y. Kitade, Y. Furutani, M. Kudou,
M. Oda, H. Kandori, K. Tsumoto and T. Tanaka*
"Manipulation of Protein-Complex Function by Using an Engineered
Heterotrimeric Coiled-Coil Switch"
Org. Biomol. Chem. 7, 3102-3111
(2009).
K. Nakashima, T. Nakamura, S. Takeuchi, M. Shibata, M. Demura, T.
Tahara and H. Kandori*
“Property of Anion Binding Site of pharaonis Halorhodopsin Studied by Ultrafast
Pump-Probe Spectroscopy and Low-Temperature FTIR Spectroscopy”
J. Phys. Chem. B 113, 8429-8434
(2009).
M. Yoshitsugu, J. Yamada, and H. Kandori*
"Color-Changing Mutation in the E-F Loop of Propeorhodopsin"
Biochemistry 48, 4324-4330
(2009).
V. A. Lorenz-Fonfria* and H. Kandori
"Spectroscopic and Kinetic Evidence on How Bacteriorhodopsin Accomplishes
Vectorial Proton Transport under Functional Conditions"
J. Am. Chem. Soc. 131, 5891-5901
(2009).
Y. Furutani, H. Kandori*, M. Kawano*, K. Nakabayashi, M.
Yoshizawa and M. Fujita*
“In situ Spectroscopic, Electrochemical, and Theoretical Studies on the
Photoinduced Host-Guest Electron Transfer that Precedes Unusual Host-mediated
Alkane Photooxidation”
J. Am. Chem. Soc. 131, 4764-4768
(2009).
Y. Kitade, Y. Furutani, N. Kamo and H. Kandori*
“Proton Release Group of pharaonis Phoborhodopsin Revealed by ATR-FTIR
Spectroscopy”
Biochemistry 48, 1596-1603
(2009).
T. Iwata, M. L. Paddock, M. Y. Okamura and H. Kandori*
“Identification of FTIR Bands due to Internal Water Molecules around the
Quinone Binding Sites in the Reaction Center from Rhodobacter sphaerroides”
Biochemistry 48, 1220-1229
(2009).
A. Yamamoto, T. Iwata, Y. Sato, D. Matsuoka, S. Tokutomi
and H. Kandori*
"Light Signal Transduction Pathway from the Flavin Chromophore to the Jα
Helix of Arabidopsis Phototropin1"
Biophys. J. 96, 2771-2778 (2009).
A. Kawanabe and H. Kandori*
"Photoreactions and Structural Changes of Anabaena Sensory Rhodopsin"
Sensors 9, 9544-9607 (2009).
D. Suzuki, Y.
Sudo, Y. Furutani, H. Takahashi, M. Homma and H. Kandori*
"Structural Changes of
Salinibacter Sensory Rhodopsin I upon Formation of the K and M
Photointermediates"Biochemistry 47, 12750-12759
(2008).
S. Neya,* M.
Suzuki, H. Ode, T. Hoshino, Y. Furutani, H. Kandori, H. Hori, K.
Imai and T. Komatsu
"Functional Evaluation of Iron
Oxypyriporphyrin in Protein Heme Pocket"
Inorg. Chem. 47, 10771-10778 (2008).
A. Kawanabe, Y. Furutani, S. R. Yoon, K-H. Jung, and H.
Kandori*
"FTIR Study of the L
Intermediate of Anabaena Sensory
Rhodopsin: Structural
Changes in the Cytoplasmic Region"
Biochemistry 47, 10033-10040 (2008).
T. Nakamura, S.
Takeuchi, M. Shibata, M. Demura, H. Kandori and T. Tahara*
"Ultrafast Pump-Probe Study of
the Primary Photoreaction Process in
pharaonis Halorhodopsin: Halide-Ion Dependence and Isomerization Dynamics"
J. Phys. Chem B 112, 12795-12800
(2008).
T.
Kitajima-Ihara, Y. Furutani, D. Suzuki, K. Ihara, H. Kandori, M.
Homma and Y. Sudo*
"Salinibacter Sensory Rhodopsin: Sensory Rhodopsin I-like Protein from a
Eubacterium"
J. Biol. Chem.
283, 23533-23541
(2008).
M. Ito, Y. Sudo, Y. Furutani, T. Okitsu, A.Wada, M. Homma,
JL. Spudich and H. Kandori*
"Steric Constraint in the
Primary Photoproduct of Sensory Rhodopsin II
Is a prerequisite for Light-Signal Transfer to HtrII"
Biochemistry 47, 6208-6215 (2008).
V. A. Lorenz-Fonfria, Y. Furutani and H. Kandori*
"Active Internal Waters in the
Bacteriorhodopsin Photocycle. A Comparative Study
of the L and M Intermediates at Room and Cryogenic Temperatures by Infrared
Spectroscopy"Biochemistry 47,
4071-4081 (2008).
M. Yoshitugu, M. Shibata, D. Ikeda, Y. Furutani and H.
Kandori*
"Color Change of
Proteorhodopsin by a Single Amino Acid Replacement at a Distant Cytoplasmic
Loop"Angew. Chem. Int. Ed.,
47, 3923-3926, (2008).
Y. Furutani, M. Ito, Y. Sudo, N. Kamo and H. Kandori*
"Protein-Protein Interaction
of a pharaonis Halorhodopsin
Mutant Forming a Complex
with pharaonis Halobacterial
Transducer Protein II Detected by Fourier Transform Infrared Spectroscopy"
Photochem.
Photobiol. 84,
874-879 (2008).
A. Wada, A. Kawanabe, Y. Furutani, H. Kandori and H.
Ohtani*
"Quantum Yields for the Light
Adaptations in Anabaena Sensory Rhodopsin and Bacteriorhodopsin"
Chem. Phys. Lett. 453, 105-108,
(2008).
Y. Sudo, Y.
Furutani, M. Iwamoto, N. Kamo and H. Kandori*
"Structural Changes in the O-decay Accelerated Mutants of pharaonis Phoborhodopsin"
Biochemistry 47, 2866-2874 (2008).
Y. Furutani, H. Takahashi, J. Sasaki, Y. Sudo, J. L. Spudich, and
H. Kandori*
"Structural Changes of Sensory Rhodopsin I
and its Transducer Protein Are Dependent on the Protonated State of Asp76"
Biochemistry 47, 2875-2883
(2008).
A. Yamamoto, T. Iwata, S. Tokutomi, H. Kandori*
"Role of Phe1010 in Light-Induced Structural Changes of the neo1-LOV2
Domain of Adiantum"
Biochemistry 47, 922-928 (2008).
S. Neya,* A.
Takahashi, H. Ode, T. Hoshino, A. Ikezaki, Y. Ohgo, M. Takahashi, Y.
Furutani,
V. A. Lorenz-Fonfria, H. Kandori, H. Hiramatsu, T. Kitagawa, J.
Teraoka, N. Funasaki and M. Nakamura
“Electronic Properties in a Five-Coordinate
Azido Complex of Nonplanar Ion(III) Porphyrin:
Revisiting to Quantum Mechanical Spin Admixing"
Bull. Chem. Soc.
Jpn. 81, 136-141
(2008)
D. Suzuki, T.
Kitajima-Ihara, Y. Furutani, K. Ihara, H. Kandori, M. Homma, and
Y. Sudo*
“A Photochromic Photoreceptor from a Eubacterium”
Communicative & Integrative Biology
1, 1-3 (2008).
Y. Furutani, Y. Sudo, and H. Kandori
"FTIR Studies of Protein-Protein Interaction Changes
between pharaonis Phoborhodopsin and its Cognate Transducer Protein"
Curr. Top. Biochem. Res. 10,
63-77 (2008).
Y. Furutani, K. Ido, M. Sasaki, M. Ogawa and H. Kandori*
"Clay Mimics Color Tuning in Visual Pigments"
Angew. Chem. Int. Ed. 46, 8010-8012, (2007).
Y. Sato, M. Nabeno, T. Iwata, S. Tokutomi, M. Sakurai and H. Kandori*
"Heterogeneous Environment of the S-H Group of Cys966 near the Flavin Chromophore
in the LOV2 Domain of Adiantum Neochrome1"
Biochemistry 46, 10258-10265 (2007).
A. Kawanabe, Y. Furutani, K.-H. Jung and H. Kandori*
"Photochromism of Anabaena Sensory Rhodopsin"
J. Am. Chem. Soc. 129, 8644-8649 (2007).
S. Neya*, A. Takahashi, H. Ode, T. Hoshino, M. Hata, A. Ikezaki, Y. Ohgo, M. Takahashi,
H. Hiramatsu, T. Kitagawa, Y. Furutani, H. Kandori, N. Funasaki and M. Nakamura
"Magnetic and Infrared Properties of the Azide Complex of
2,7,12,17-[Tetrapropylporphycenato]iron(III):
A Novel Admixing Mechanism of the S = 5/2 and S = 3/2 States."
Eur. J. Inorg. Chem. 3188-3194 (2007).
M. Shibata, M. Yoshitsugu, N. Mizuide, K. Ihara and H. Kandori*
"Halide Binding by the D212N Mutant of Bacteriorhodopsin Affects Hydrogen Bonding
of Water in the Active Site."
Biochemistry 46, 7525-35 (2007).
T. Iwata, A. Yamamoto, S. Tokutomi and H. Kandori*
"Hydration and temperature similarly affect light-induced protein structural changes
in the chromophoric domain of phototropin. "
Biochemistry 46, 7016-21 (2007).
V. A. Lorenz-Fonfria* and
H. Kandori
"Bayesian Maximum Entropy (Two-Dimensional) Lifetime Distribution
Reconstruction
from Time-Resolved Spectroscopic Data"
Appl. Spectrosc. 61, 428-43
(2007).
D. Ikeda, Y. Furutani and H. Kandori*
"FTIR Study of theRetinal Schiff Base and Internal Water Molecules of
Proteorhodopsin"
Biochemistry 46, 5365-73 (2007).
Y. Sudo, Y. Furutani, J. L. Spudich*, and H. Kandori*
"Early Photocycle Structural Changes in a Bacteriorhodopsin Mutant Engineered to Transmit Photosensory Signals"
J. Biol. Chem. 282, 15550-15558 (2007).
A. Peralvarez-Marin, V. A. Lorenz-Fonfria, J. L. Bourdelande, E. Querol, H.
Kandori and E. Padros*
"Inter-helical Hydrogen Bonds Are Essential Elements for Intra-protein
Signal Transduction:
The Role of Asp115 in Bacteriorhodopsin Transport Function"
J. Mol. Biol. 368, 666-76 (2007).
V. A. Lorenz-Fonfria* and H. Kandori
"Practical Aspectsof the Maximum Entropy Inversion
of the Laplace Transform for Quantitative Analysis of Multi-Exponential
Data"
Appl. Spectrosc. 61, 74-84 (2007).
D. Matsuoka, T. Iwata, K. Zikihara, H. Kandori and S. Tokutomi*
"Primary Processes during the Light-Signal Transduction of Phototropin"
Photochem. Photobiol. 83, 1-9 (2007).
T. Iwata, D. Nozaki, Y. Sato, K. Sato, Y. Nishina,
K. Shiga, S. Tokutomi and H. Kandori*
“Identification of the C=O Stretching Vibrations of FMN and Peptide
Backbone by 13C-Labeling of the LOV2 domain of Adiantum Phytochrome3”
Biochemistry, 45, 15384-15391
(2006).
Y. Furutani, M. Sumii, Y. Fan, L. Shi, S. A. Waschuk, L. S.
Brown*, and H. Kandori*
"Conformational Coupling between the Cytoplasmic Carboxylic Acid and the
Retinal
in a Fungal Light-Driven Proton Pump"
Biochemistry, 45, 15349-15358
(2006).
M. Shibata, Y. Saito, M. Demura and H. Kandori*
"Deprotonation of Glu234 during the photocycle of Natronomonas pharaonis halorhodopsin"
Chem. Phys. Lett., 432, 545-547
(2006).
Y. Sudo, Y. Furutani, H. Kandori and J. L. Spudich
"Functional importance of the interhelical hydrogen bond between THR204
and TYR174
of sensory rhodopsin II and its alteration during the signaling process"
J. Biol. Chem., 281, 34239-34245
(2006).
Y. Furutani, Y. Sudo, A. Wada, M. Ito, K. Shimono, N. Kamo and H.
Kandori*
"Assignment of the Hydrogen-Out-Of-Plane and In-Plane Vibrations of
the
Retinal Chromophore in the K Intermediate of pharaonis Phoborhodopsin"
Biochemistry, 45, 11836-11843
(2006).
K. Zikihara, T. Iwata, D. Matsuoka, H. Kandori,
Takeshi Todo, and Satoru Tokutomi
“Photoreaction Cycle of the Light, Oxygen, and Voltage Domain in FKF1
Determined by Low-Temperature Absorption Spectroscopy”
Biochemistry, 45, 10828-10837
(2006)
N. Mizuide, M. Shibata, N. Friedman, M. Sheves, M. Belenky, J.
Herzfeld and H. Kandori*
"Structural Changes in Bacteriorhodopsin Following Retinal
Photoisomerization from the 13-cis Form"
Biochemistry, 45, 10674-10681
(2006).
M. Shibata, K. Ihara and H. Kandori*
"Hydrogen-Bonding Interaction of the Protonated Schiff Base with
Halides
in a Chloride-Pumping Bacteriorhodopsin Mutant"
Biochemistry, 45, 10633-10640
(2006).
N. Muneda, M. Shibata, M. Demura and H. Kandori*
"Internal Water Molecules of the Proton-Pumping Halorhodopsin in the
Presence of Azide"
J. Am. Chem. Soc. 128, 6294-6295
(2006).
K. Kamada, Y.
Furutani, Y. Sudo, N. Kamo and H. Kandori*
"Temperature-Dependent Interactions
between Photoactivated Pharaonis
Phoborhodopsin and Its Transducer"
Biochemistry, 45, 4859-4866
(2006).
A. Kawanabe, Y. Furutani, K.-H. Jung and H. Kandori*
"FTIR Study of the Photoisomerization Processes
in the 13-cis and All-trans Forms of Anabaena
Sensory Rhodopsin at 77 K"
Biochemistry, 45, 4362-4370
(2006).
Y. Furutani, D. Ikeda, M. Shibata and H. Kandori*
"Strongly Hydrogen-Bonded Water Molecule is Observed
only in the Alkaline Form of Proteorhodopsin"
Chem. Phys., 324, 705-708 (2006).
V. A. Lorenz-Fonfria* and H. Kandori.
"Transformation of Time-Resolved Spectra to Lifetime-Resolved Spectra by
Maximum Entropy Inversion of the Laplace Transform."
Appl. Spectrosc. 60, 407-416
(2006).
T. Ota, Y. Furutani, A. Terakita, Y. Shichida and H. Kandori*
"Structural Changes in the Schiff Base Region of Squid Rhodopsin
upon Photoisomerization Studied by Low-Temperature FTIR Spectroscopy"
Biochemistry 45, 2845-2851
(2006).
T. Hirano, N. Fujioka, H. Imai, H. Kandori, A. Wada, M. Ito and Y.
Shichida*
"Assignment of the Vibrational Modes of the Chromophore
of Iodopsin and
Bathoiodopsin: Low-Temperature Fourier Transform Infrared Spectroscopy of
13C- and 2H-Labeled Iodopsins"
Biochemistry 45, 1285-1294 (2006).
T. Iwata and H. Kandori
"Photochemistry in Phototropin, a Blue Light Sensor Protein in
Plants"
J. Chin. Chem. Soc. 53, 67-73
(2006).
H. Kandori*
"Retinal binding proteins"
in "cis-trans Isomerization in Biochemistry", C. Dugave ed., pp.
53-75,
Wiley-VCH Freiburg (2006).
Y. Sudo, Y. Furutani, A. Wada, M. Ito, N. Kamo and H. Kandori*
"Steric Constraint in the Primary Photoproduct of an
Archaeal Rhodopsin from
Regiospecific Perturbation of C-C Stretching Vibration of the Retinyl Chromophore
J. Am. Chem. Soc. 127, 16036-16037 (2005).
M. Sumii, Y. Furutani, S. A. Waschuck, L. S.
Brown and H. Kandori*
"Strongly Hydrogen-Bonded Water
Molecule Present near the Retinal Chromophore
of Leptosphaeria Rhodopsin, the
Bacteriorhodopsin-like Proton Pump from a Eukaryote"
Biochemistry 44, 15159-15166 (2005).
H. Kandori, H. Nakamura, Y. Yamazaki and T. Mogi*
"Redox-induced Protein Structural Changesin Cytochrome bo Revealed by
Fourier-transform Infrared Spectroscopy and 13C-Tyr-labeling"
J. Biol. Chem. 280, 32821-32826 (2005).
Y. Furutani, A. Kawanabe, K-H. Jung and H. Kandori*
"FTIR Spectroscopy of the All-trans Form of Anabaena
Sensory Rhodopsin at 77K:
Hydrogen Bond of a Water between the Schiff Base and
Asp75"
Biochemistry 44, 12287-96 (2005).
M. Shibata, N. Muneda, T. Sasaki, K. Shimono, N. Kamo, M. Demura
and H. Kandori*
"Hydrogen-Bonding Alterations of the Protonated Schiff
Base and Water Molecule
in the Chloride Pump of Natronobacterium
pharaonis"
Biochemistry 44, 12279-86 (2005).
D. Nozaki, T. Iwata, S. Tokutomi and H. Kandori*
"Unique Temperature Dependence in the Adduct Formation
between FMN and Cysteine
S-H Group in the LOV2 Domain of Adiantum Phytochrome3"
Chem. Phys. Lett. 410, 59-63 (2005).
Y. Furutani, A. Terakita, Y. Shichida and H. Kandori*
"FTIR Studies of the Photoactivation Processes in Squid
Retinochrome"
Biochemistry 44, 7988-7997 (2005).
T. Iwata, D. Nozaki, S. Tokutomi and H. Kandori*
"Comparative Investigation of the LOV1 and LOV2 Domains
in Adiantum Phytochrome3"
Biochemistry 44, 7427-7434 (2005).
M. Shibata and H. Kandori*
"FTIR Studies of Internal Water Molecules in the Schiff
Base Region of Bacteriorhodopsin"
Biochemistry 44, 7406-7413 (2005).
Y. Furutani, K. Kamada, Y. Sudo, K. Shimono, N. Kamo and H. Kandori*
"Structural Changes of the Complex between pharaonis Phoborhodopsin and Its Cognate
Transducer upon Formation of the M Photointermediate"
Biochemistry 44, 2909-2915 (2005).
Y. Sato, T. Iwata,
S. Tokutomi and H. Kandori*