研究業績
論文リスト
一般講演
招待講演など
外部資金導入
論文リスト
2012
L. Reissig, T. Iwata, T. Kikukawa, M. Demura, N. Kamo, H. Kandori and Y. Sudo*
"The influence of halide binding on the hydrogen bonding network in the active site of Salinibacter sensory rhodopsin I"
Biochemistry 51, in press (2012).
Y. Furutani*, K. Fujiwara, T. Kimura, T. Kikukawa, M. Demura and H. Kandori
"Dynamics of dangking bonds of water molecules in pharaonis halorhodopsin during chloride ion transportation"
J. Phys. Chem. Lett. 3, 2964-2969 (2012).
M. Sumii, A. Kawanabe, Y. Fan, Y. Furutani, L. S. Brown and H. Kandori*
"Comparative FTIR study of a new fungal rhodopsin"
J. Phys. Chem. B 116, 11881-11889 (2012).
K. Saito, H. Kandori and H. Ishikita*
"Factors that differentiate the H-bond strengths of water near the Schiff base in bacteriorhodopsin and Anabaena sensory rhodopsin"
J. Biol. Chem. 287, 34009-34018 (2012).
D. Yamada, Y. Zhang, T. Iwata, K. Hitomi, E. D. Getzoff and H. Kandori*
"FTIR study of the photoactivation process of Xenopus (6-4) photolyase"
Biochemistry 51, 5774-5783 (2012).
S. Sekharan*, K. Katayama, H. Kandori and K. Morokuma*
"Color vision: "OH-site" rule for seeing red and green"
J. Am. Chem. Soc. 134, 10706-10712 (2012).
K. Muroda, K. Nakashima, M. Shibata M. Demura and H. Kandori*
"Protein-bound water as the determinant of asymmetric functional conversion
between light-driven proton and chloride pumps"
Biochemistry 51, 4677-4684 (2012)
K. Inoue, L. Reissig, M. Sakai, S. Kobayashi, M. Homma, M. Fujii, H. Kandori, and Y. Sudo*
"Absorption spectra and photochemical reactions in a unique photoactive protein, middle rhodopsin MR"
J. Phys. Chem. B 116, 5888-5899 (2012)
T. Kanti Maiti, K. Yamada, K. Inoue and H. Kandori*
"L105K mutant of proteorhodopsin"
Biochemistry 51, 3198-3204 (2012)
K. Yamada, A. Kawanabe, S. Yoshizawa, K. Inoue, K. Kogure and H. Kandori*
"Anomalous pH effect of blue proteorhodopsin"
J. Phys. Chem. Lett. 3, 800-804 (2012)
K. Katayama, Y. Furutani, H. Imai
and H. Kandori*
“Protein-bound water molecules in primate red- and green-sensitive visual
pigments”
Biochemistry 51, 1126-1133
(2012).
S. Yoshizawa*, A. Kawanabe, H. Ito, H. Kandori and K. Kogure*
"Diversity and functional analysis of proteorhodopsin in marine Flavobacteria"
Environ. Microbiol. 14, 1240-1248 (2012).
D. Yamada and H. Kandori*
"FTIR spectroscopy of flavin-binding photoreceptors"
Methods in Molecular Biology, in press (2012).
T.
Iwata, S.
Tokutomi, and H. Kandori*
“Light-induced
structural changes of the LOV2 domains in various phototropins revealed by FTIR
spectroscopy”
BIOPHYSYCS 7, 89-98 (2012)
2011
Y. Zhang, J. Yamamoto, D. Yamada, T. Iwata, K. Hitomi, T. Todo, E. D. Getzoff, S. Iwai and H. Kandori*
"Substrate Assignment of the (6-4) Photolyase Reaction by FTIR Spectroscopy"
J. Phys. Chem. Lett. 183, 2774-2777 (2011)
G. Dai, Y. Zhang, J. Tamogami, M. Demura, N. Kamo, H. Kandori and T. Iwasa*
"An Amino Acid Residue (S201) in the Retinal Binding Pocket Regulates
the Photoreaction Pathway of Phoborhodopsin"
Biochemistry 50. 7177-7183 (2011)
V. A. Lorenz-Fonfria*, H. Kandori and E. Padros
"Probing specific molecular processes and intermediates by time-resolved
Fourier-transform
infrared spectroscopy: Application to the bacteriorhodopsin photocycle"
J. Phys. Chem. B 115, 7972-7983 (2011).
H. Irieda, L. Reissig, A. Kawanabe, M. Homma, H. Kandori and Y. Sudo*
"Structural characteristics around β-ionone ring of the retinal chromophore in Salinibacter sensory rhodopsin I"
Biochemistry 50, 4912-4922 (2011).
T. Iwata, A. Watanabe, M. Iseki, M. Watanabe and H. Kandori*
"Strong donation of the hydrogen bond of tyrosine during photoactivation
of the BLUF domain"
J. Phys. Chem. Lett. 2, 1015-1019 (2011).
Y. Zhang, T. Iwata, J. Yamamoto, K. Hitomi, S. Iwai, T. Todo, E. D. Getzoff and H. Kandori*
"FTIR study of light-dependent activation and DNA repair processes
of (6-4) photolyase"
Biochemistry 50, 3591-3598 (2011).
J. Sasaki, H. Takahashi, Y. Furutani, H. Kandori and J. L. Spudich*
"Sensory rhodopsin-I as a flip-flop: Opposite conformational changes
from the same photoisomerization"
Biophys. J. 100, 2178-2183 (2011).
K. Inoue*, Y. Sudo, M. Homma and H. Kandori
"Spectrally silent intermediates during the photochemical reactions of Salinibacter sensory rhodopsin I"
J. Phys. Chem. B 115, 4500-4508 (2011).
M. Shibata, T. Uchihashi, H. Yamashita, H. Kandori and T. Ando*
"Structural changes in bacteriorhodopsin in response to alternate
illumination
observed by high-speed atomic force microscopy"
Angew. Chem. Int. Ed. 50, 4410-4413 (2011).
A. Nakatsuma, T. Yamashita, K. Sasaki, A. Kawanabe, K. Inoue, Y. Furutani, Y. Shichida and H. Kandori*
"Chimeric microbial rhodopsins containing the thrid cytoplasmic loop
of bovine rhodopsin"
Biophys. J. 100, 1874-1882 (2011).
Y. Furutani, T. Murata and H. Kandori*
"Sodium or lithium ion-binding-induced structural changes in the K-ring
of V-ATPase
from Enterococcus hirae revealed by ATR-FTIR spectroscopy"
J. Am. Chem. Soc. 133, 2860-2863 (2011).
Y. Sudo*, K. Ihara, S. Kobayashi, D. Suzuki, H. Irieda, T. Kikukawa, H. Kandori and M. Homma
"A microbial rhodopsin with a unique retinal composition shows both sensory rhodopsin II
and bacteriorhodopsin-like properties"
J. Biol. Chem. 286, 5967-5976 (2011).
神取秀樹
ロドプシンの分子科学
Mol. Sci. 5, A0043 (2011).
神取秀樹
「光といのち」を化学する
化学と工業 64, 885-887 (2011).
神取秀樹
分子研は生命科学にどう取り組むべきか?
分子研レターズ 64, 10-12 (2011).
A. Kawanabe, Y. Furutani, K.-H. Jung and H. Kandori*
"An inward proton transport using Anabaena sensory rhodopsin"
J. Microbiol. 49, 1-6 (2011).
H. Kandori
“Protein-Controlled Ultrafast Photoisomerization in Rhodopsin and
Bacteriorhodopsin”
in "Supramolecular Effects on Photochemical and
Photophysical Processes", V.
Ramamurthy, Y. Inoue, eds., John Wiley & Sons, Inc. Hoboken, pp. 571-595 (2011).
R. S. H. Liu, L.-Y. Yang, Y.-P. Zhao, A. Kawanabe and H. Kandori
“Supramolecular Effects on Mechanisms of
Photoisomerization: Hula-Twist, Bicycle-Pedal and One-Bond-Flip”
in
"Supramolecular Effects on Photochemical and Photophysical Processes",
V.
Ramamurthy, Y. Inoue, eds., John Wiley & Sons, Inc. Hoboken, pp. 547-570
(2011).
2010
T. Iwata, Y. Zhang, K. Hitomi, E. D. Getzoff and H. Kandori*
"Key dynamics
of conserved asparagine in a cryptochrome/photolyase family protein by Fourier
transform infrared spectroscopy"
Biochemistry 49, 8882-8891 (2010).
S. Kawaguchi, O. Kambara, M. Shibata, H. Kandori and K. Tominaga*
"Low-frequency dynamics of bacteriorhodopsin studied by terahertz
time-domain spectroscopy"
Phys Chem Chem Phys. 12,10255-10262 (2010).
K. Katayama, Y. Furutani and H. Kandori*
"FTIR study of the photoreaction of bovine rhodopsin in the presence
of hydroxylamine"
J Phys Chem B. 114, 9039-9046 (2010).
S. Neya*, M. Suzuki, T. Hoshino, H. Ode, K. Imai, T., Komatsu, A. Ikezaki, M. Nakamura, Y. Furutani
and H. Kandori
"Molecular insight into intrinsic heme distortion in ligand binding
in hemoprotein"
Biochemistry 49, 5642-5650 (2010).
V. A. Lorenz-Fonfria, Y. Furutani. T. Ota, K. Ido and H. Kandori*
"Protein fluctuations as the possible origin of the thermal activation
of rod photoreceptors in the dark"
J. Am. Chem. Soc. 132, 5693-5703 (2010).
K. Hashimoto, A. R. Choi, Y. Furutani, K.-H. Jung and H. Kandori*
"Low-temperature FTIR study of Gloeobacter rhodopsin: Presence of
strongly hydrogen-bonded water and
long-range structural protein perturbation upon retinal photoisomerization"
Biochemistry 49, 3343-3350 (2010).
K. Yamada, A. Kawanabe and H. Kandori*
"Importance of alanine at position 178 in proteorhodopsin for absorption
of prevalent ambient light in the marine environment"
Biochemistry 49, 2416-2423 (2010).
M. Shibata, H. Yamashita, T. Uchihashi, H. Kandori and T. Ando*
"High-speed atomic force microscopy shows dynamic molecular processes
in photoactivated bacteriorhodopsin"
Nature Nanotechnol. 5, 208-212 (2010).
J. Yagasaki, D. Suzuki, K. Ihara, K. Inoue, T. Kikukawa, M. Sakai, M. Fujii, M. Homma, H. Kandori* and Y. Sudo*
"Spectroscopic studies of a sensory rhodopsin I homologue from the
archaeon Haloarcula vallismortis"
Biochemistry 49, 1183-1190 (2010).
K. Katayama, Y. Furutani, H. Imai* and H. Kandori*
"An FTIR study of monkey green- and red-sensitive visual
pigments"
Angew. Chem. Int. Ed. 49, 891-894 (2010).
H. Kandori
"Hydrogen Bonds of Protein-Bound Water Molecules in Rhodopsins"
in "Hydrogen Bonding and Transfer in the Excited State",
K.-L. Han, G.-J. Zhao, eds., pp. 377-391, John Wiley & Sons Ltd, West
Sussex (2010).
川鍋陽、古谷祐詞、神取秀樹
逆向きプロトン輸送タンパク質の創成
生物物理、50, 236-237 (2010).
H. Kandori, Y. Sudo and Y. Furutani
"Protein-Protein Interaction Changes in
an Archaeal Light-Signal Transduction"
J. Biomed. Biotech. in press (2010).
内橋貴之、柴田幹大、山下隼人、神取秀樹、安藤敏夫
高速AFMイメージング技術で可視化する生体分子の機能動態
化学とマイクロ・ナノシステム研究会誌、9,
1-6 (2010).
一般講演
○片山耕大、古谷祐詞、今井啓雄、神取秀樹
「全反射赤外分光法によるサル緑感受性視物質のクロライドイオン結合機構解析」
日本生物物理学会中部支部講演会、2012年3月19日、名古屋
○山田大智、
岩田達也、
神取秀樹
「アニオンラジカル型による(6-4)光回復酵素のDNA修復」
2011年度生物物理学会中部支部講演会、2012年3月19日、名古屋
○神取秀樹
「フラビン蛋白質の赤外分光研究」
新学術領域研究「高次π空間」第7回公開シンポジウム、2011年3月13日、松山
T. Iwata,
“Property of Flavin-binding Photoreceptors”
2nd Symposium on Life Science, March 7, 2012, Nagoya,
Japan
T. Iwata, S. Ito, M. Iseki, M. Watanabe, and H. Kandori
“Hydrogen-bonding structures of the tyrosine and glutamine residues in the
BLUF domain”
Gordon Research Conference “Photosensory
Receptors & Signal Transduction”, January 24, 2012, Galveston,
USA
2011
○伊藤洋康、吉澤 晋、川鍋 陽、木暮一啓、神取秀樹
「プロテオロドプシンの生細胞での光駆動プロトンポンプ測定」
日本生体エネルギー研究会、2011年12月21日、京都
○山田大智、
張宇、
岩田達也、
山元淳平、
人見研一、
岩井成憲、
藤堂剛、 E.
D. Getzoff、
神取秀樹
「DNA光回復酵素の活性化と修復」
日本生体エネルギー研究会、2011年12月21日、京都
○神取秀樹
「イオン輸送生ロドプシンのイオン透過を考える」
日本生体エネルギー研究会、2011年12月21日、京都
○神取秀樹
「フラビン蛋白質の赤外分光研究」
特定領域研究「高次系分子科学」第6回合同班会議、2011年12月9日、沖縄
○井上圭一
「時間分解分光法によるミクロからマクロにおよぶタンパク質の反応ダイナミクスの理解」
特定領域研究「高次系分子科学」第6回合同班会議、2011年12月8日、沖縄
○H.
Kandori
“FTIR study of flavin binding proteins in action”
3rd
International Symposium on Emergence of Highly Elaborated p-Space and its Function
November 18, 2011, Tsukuba, Japan
○K. Sasaki, T. Yamashita, K. Inoue, Y. Shichida, and H. Kandori
“Chimeric proton pumping rhodopsin containing the cytoplasmic
loop of bovine rhodopsin”
3rd International Symposium on Emergence of Highly Elaborated p-Space and its Function
November 18, 2011, Tsukuba, Japan
○K. Muroda, K. Nakashima, M. Shibata, M. Demura and H. Kandori
“Tenfold mutant of pharaonis halorhodopsin”
3rd International Symposium on Emergence of Highly Elaborated p-Space and its Function
November 18, 2011, Tsukuba,
Japan
○片山耕大、古谷祐詞、今井啓雄、神取秀樹
「霊長類色覚視物質の内部結合水の構造解析」
第17回錯体化学若手の会中部・東海地区勉強会、2011年11月12日、名古屋
○山田大智、張宇、岩田達也、人見研一、藤堂
剛、E. D. Getzoff、神取秀樹
「FTIRを用いた(6-4)光回復酵素の活性化過程における分光解析」
第17回錯体化学若手の会中部・東海地区勉強会、2011年11月12日、名古屋
○Y. Zhang, J. Yamamoto, D. Yamada,
T. Iwata, K. Hitomi, S. Iwai, T. Todo, E. D. Getzoff
and H. Kandori
“FTIR study of light-dependent activation and DNA
repair processes of (6-4) photolyase”
17th
International Biophysics Congress and 12th National Biophysics
Congress
October 31, 2011, Beijing, China
○岩田達也
「BLUFドメインの光反応におけるチロシンとグルタミン残基の構造」
新学術領域研究「植物の環境感覚:刺激受容から細胞応答まで」第2回若手の会、
2011年10月26日、滋賀
○岩田達也
「新規蛍光タンパク質の開発
-細胞内酸化還元状態の可視化-」
名工大・名市大合同テクノフェア2011、2011年